INNER CODE UNIT · Python

plot_substrate

MathCancer/PhysiCell · beta/anim_substrate2D.py:108

def plot_substrate():
    global current_idx, axes_max, cbar

    xml_file = "output%08d.xml" % current_idx
    tree = ET.parse(xml_file)
    root = tree.getroot()
#    print('time=' + root.find(".//current_time").text)
    mins = float(root.find(".//current_time").text)
    hrs = mins/60.
    days = hrs/24.
    title_str = '%d days, %d hrs, %d mins' % (int(days),(hrs%24), mins - (hrs*60))
    print(title_str)

    fname = "output%08d_microenvironment0.mat" % current_idx
    output_dir_str = '.'
    fullname = output_dir_str + "/" + fname
    if not pathlib.Path(fullname).is_file():
        print("file not found",fullname)

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