INNER CODE UNIT · Python

days

MathCancer/PhysiCell · beta/anim_substrate2D.py:117

    days = hrs/24.
    title_str = '%d days, %d hrs, %d mins' % (int(days),(hrs%24), mins - (hrs*60))
    print(title_str)

    fname = "output%08d_microenvironment0.mat" % current_idx
    output_dir_str = '.'
    fullname = output_dir_str + "/" + fname
    if not pathlib.Path(fullname).is_file():
        print("file not found",fullname)
        return

    info_dict = {}
    scipy.io.loadmat(fullname, info_dict)
    M = info_dict['multiscale_microenvironment']
    print('plot_substrate: field_idx=',field_idx)
    f = M[field_idx,:]   # 

    print("M.shape = ",M.shape)  # e.g.,  (6, 421875)  (where 421875=75*75*75)

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