INNER CODE UNIT · Python

main

MariaNattestad/assemblytics · assemblytics/index.py:179

def main():
    parser=argparse.ArgumentParser(description="Index and orient a coordinate file for dotplots.")
    parser.add_argument("-coords",help="coords.csv file from uniq_anchor.py" ,dest="coords", type=str, required=True)
    parser.add_argument("-out",help="output directory for assemblytics_* index and oriented coordinates files (default: current directory)" ,dest="out", type=str, default=".")
    parser.set_defaults(func=run)
    args=parser.parse_args()
    args.func(args)

if __name__=="__main__":
    main()

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