INNER CODE UNIT · Python

total_query_length

MariaNattestad/assemblytics · assemblytics/dotplot.py:72

    total_query_length = query_lengths.sum()
    query_labels = [name if length >= 0.02 * total_query_length else "" for name, length in query_lengths.items()]
    query_breaks = query_lengths.cumsum().tolist()

    # Plotting
    plt.figure(figsize=(10, 10))
    
    colors = {"unique": "black", "repetitive": "red"}
    
    for tag in ["unique", "repetitive"]:
        df = coords[coords['tag'] == tag]
        if not df.empty:
            for _, row in df.iterrows():
                plt.plot([row['ref_loc_start'], row['ref_loc_stop']], 
                         [row['query_loc_start'], row['query_loc_stop']], 
                         color=colors[tag], linewidth=1.5, solid_capstyle='butt')

    plt.title(plot_title, fontsize=16)

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