INNER CODE UNIT · Python

length

linsalrob/ComputationalGenomicsManual · Python/countfastq.py:94

        length=sum(lens)

        len_so_far = 0
        n50 = None
        n75 = None
        auN = 0
        for i in lens:
            len_so_far += i
            if not n50 and len_so_far >= length * 0.5:
                n50 = i
            if not n75 and len_so_far >= length * 0.75:
                n75 = i
            auN += i**2

        auN /= length

        if args.t:
            print(f"{faf}\t{len(lens):,}\t{length:,}\t{lens[0]:,}\t" \

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