INNER CODE UNIT · Python

main

linnabrown/run_dbcan · dbcan/cli/cgc_process_json.py:224

def main():
    """
    Main function to compile JSON from a 'cgc_standard.out' file.

    This function parses command-line arguments to get input and output file paths, reads the input file, processes and renames columns, and writes the processed data to a JSON file using a custom JSON encoder.

    Side Effects:
        - Reads a specified input file.
        - Writes processed data to a JSON output file.
        - Can terminate the script if the input file does not have the correct extension.
    """
    parser = argparse.ArgumentParser(description="Compiling Json from cgc_standard.out")
    parser.add_argument(
        "-i",
        required=True,
        help="path to output file (cgc_standard.out) file",
        type=lambda s: file_ext(("out", "csv"), s, parser),
    )

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