INNER CODE UNIT · JavaScript

re_walk

lh3/pangene · pangene.js:172

		const re_walk = /([><])([^\s><]+)/g;
		let m, walk = { asm:t[1]+"#"+t[2], sample:t[1], hap:parseInt(t[2]), sname:t[3], st:-1, en:-1, v:[], lof:[] };
		if (t[4] != "*") walk.st = parseInt(t[4]);
		if (t[5] != "*") walk.st = parseInt(t[5]);
		while ((m = re_walk.exec(t[6])) != null) {
			if (this.segname[m[2]] != null) {
				const sid = this.segname[m[2]];
				const v = sid * 2 | (m[1] == '>'? 0 : 1);
				walk.v.push(v);
			}
		}
		for (let k = 7; k < t.length; ++k) {
			if (/^lf:B:i/.test(t[k])) {
				let s = t[k].substr(7).split(",");
				for (let j = 0; j < s.length; ++j)
					s[j] = parseInt(s[j]);
				walk.lof = s;
			}

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