INNER CODE UNIT · C

t

lh3/miniprot · align.c:18

			int32_t k, t = (int32_t)a[j-1];
			for (k = j - 2; k >= i; --k)
				if (t - (int32_t)a[k] >= trim_back)
					break;
			t = (int32_t)a[i] + 1 - kmer2;
			for (; i < k; ++i)
				if ((int32_t)a[i] + 1 - t >= trim_back)
					break;
			for (; i <= k; ++i)
				a[i] |= 1ULL<<31;
			i = j - 1;
		}
	}
}

static inline int32_t mp_score_ungapped(int32_t alen, const uint8_t *nseq, const char *aseq, int32_t asize, const int8_t *mat)
{
	int32_t i, j, score = 0;

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