INNER CODE UNIT · C
op
lh3/miniprot · align.c:94
int32_t op = r->p->cigar[k]&0xf;
if (op == NS_CIGAR_N || op == NS_CIGAR_U || op == NS_CIGAR_V)
++n_intron;
}
r->n_exon = n_intron + 1;
r->n_feat = r->n_exon + (!!has_stop);
r->feat = Kcalloc(0, mp_feat_t, r->n_feat);
e->blen = e->n_iden = e->n_plus = e->n_fs = e->n_stop = e->dp_max = 0;
blen0 = n_iden0 = score0 = n_fs0 = n_stop0 = 0, phase0 = 0;
vs0 = r->vs, qs0 = r->qs;
acceptor0[0] = acceptor0[1] = 0;
for (k = 0, ft = 0; k < e->n_cigar; ++k) {
int32_t op = e->cigar[k]&0xf, len = e->cigar[k]>>4, len3 = len * 3;
if (op == NS_CIGAR_M) {
for (i = nl, j = al, l = 0; l < len; ++l, ++j, i += 3) {
uint8_t nt_aa, aa_aa, codon = nt[i]<<4 | nt[i+1]<<2 | nt[i+2];
int32_t s;