INNER CODE UNIT · JavaScript

main

lh3/minigraph · misc/mgutils-es6.js:289

function main(args)
{
	if (args.length == 0) {
		print("Usage: mgutils-es6.js <command> [arguments]");
		print("Commands:");
		print("  merge2vcf    convert merge BED output to VCF");
		print("  addsample    add sample names to merged BED (as a fix)");
		print("  getlcr       extract LCRs from merged BED");
		exit(1);
	}

	var cmd = args.shift();
	if (cmd === "merge2vcf") mg_cmd_merge2vcf(args);
	else if (cmd === "addsample") mg_cmd_addsample(args);
	else if (cmd === "getlcr") mg_cmd_getlcr(args);
	else throw Error("unrecognized command: " + cmd);
}

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