INNER CODE UNIT · JavaScript

blen

lh3/miniasm · misc/sam2paf.js:100

	var blen = M + I[1] + D[1];
	var qlen = M + I[1] + clip[0] + clip[1];
	var qs, qe;
	if (flag&16) qs = clip[1], qe = qlen - clip[0];
	else qs = clip[0], qe = qlen - clip[1];
	var ts = parseInt(t[3]) - 1, te = ts + M + D[1] + N;
	var a = [t[0], qlen, qs, qe, flag&16? '-' : '+', t[2], tlen, ts, te, match, blen, t[4]];
	print(a.join("\t"), extra.join("\t"));
}

buf.destroy();
file.close();

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