INNER CODE UNIT · JavaScript

min_l

lh3/miniasm · misc/paftop.js:53

			var min_l = ai[3] - ai[2] < aj[3] - aj[2]? ai[3] - ai[2] : aj[3] - aj[2];
			if (ol > min_l * mask_level)
				break;
		}
		if (j == k) a[k++] = ai;
	}
	a.length = k;
}

function pafmerge(a, max_gap)
{
	for (var i = 1; i < a.length; ++i) {
		var ai = a[i];
		for (var j = 0; j < i; ++j) {
			var aj = a[j];
			if (aj[4] != ai[4] || aj[5] != ai[5]) continue; // diff strand or chr
			var ts = [ai[7], aj[7]], te = [ai[8], aj[8]];
			var qs = [ai[2], aj[2]], qe = [ai[3], aj[3]];

View source record →