INNER CODE UNIT · C
h
lh3/ksw2 · ksw2_extd.c:56
int32_t h = p->h, h2, e = p->e, e2 = p->e2;
p->h = h1;
h += q[j];
h = h >= e? h : e;
h = h >= f? h : f;
h = h >= e2? h : e2;
h = h >= f2? h : f2;
h1 = h;
max_j = max > h? max_j : j;
max = max > h? max : h;
h -= gapoe;
e -= gape;
e = e > h? e : h;
p->e = e;
f -= gape;
f = f > h? f : h;
h2 = h1 - gapoe2;
e2-= gape2;