INNER CODE UNIT · C

m_b

lh3/bedtk · bedtk.c:259

	int64_t i, m_b = 0, *b = 0, n_b;
	int c;
	char *fn_order = 0;

	while ((c = ketopt(&o, argc, argv, 1, "s:", 0)) >= 0) {
		if (c == 's') fn_order = o.arg;
	}

	if (argc - o.ind < 1 || (argc - o.ind < 2 && isatty(0))) {
		printf("Usage: bedtk isec [options] <A.bed> <B.bed>\n");
		printf("Options:\n");
		printf("  -s FILE   list of contig IDs to specify the output order []\n");
		return 1;
	}

	cr = read_bed3b(argv[o.ind], 0, fn_order);
	assert(cr);
	cr_index2(cr, 1);

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