INNER CODE UNIT · Python

create_downloadjob

kblin/ncbi-genome-download · ncbi_genome_download/core.py:447

def create_downloadjob(entry, domain, config):
    """Create download jobs for all file formats from a summary file entry."""
    logger = logging.getLogger("ncbi-genome-download")
    logger.info('Checking record %r', entry['assembly_accession'])
    full_output_dir = create_dir(entry, config.section, domain, config.output, config.flat_output)

    symlink_path = None
    if config.human_readable:
        symlink_path = create_readable_dir(entry, config.section, domain, config.output)

    if not config.flat_output:
        checksum_path = Path(full_output_dir) / 'MD5SUMS'

        # if the MD5SUM file is missing or too old, redownload
        if not checksum_path.exists() or checksum_path.stat().st_mtime + (config.md5_cache_days * 24 * 60 * 60) < time.time():
            checksums = grab_checksums_file(entry)
            if not checksums:
                return []

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