INNER CODE UNIT · Rust

Some

informationsea/transanno · liftover-rs/src/chain/mod.rs:425

            if let Some(length) = new_sequence.get_contig_length(&one_chain.new_chromosome.name) {
                if one_chain.new_chromosome.length != length {
                    if !warned_new_chrom.contains(&one_chain.new_chromosome.name) {
                        warn!("Length of chromosome {} is not match between chain file and new FASTA. Skipping...", one_chain.new_chromosome.name);
                        warned_new_chrom.insert(one_chain.new_chromosome.name.clone());
                    }
                    continue;
                }
            } else {
                if !warned_new_chrom.contains(&one_chain.new_chromosome.name) {
                    warn!(
                        "Chromosome {} is not found in new FASTA. Skipping...",
                        one_chain.new_chromosome.name
                    );
                    warned_new_chrom.insert(one_chain.new_chromosome.name.clone());
                }
                continue;
            }

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