INNER CODE UNIT · R
threads
igordot/genomics · scripts-bigpurple/assembly-10x-supernova.sh:70
threads=$(( threads - 1 ))
mem=$(echo "$threads * 32" | bc)
# run name (used to name output folder)
supernova_version_nodot=$(echo "$supernova_version" | sed 's/\.//g')
run_id="assembly-supernova-v${supernova_version_nodot}-reads${max_reads_m}M"
# display settingse
echo
echo " * fastq dir: $fastq_dir "
echo " * supernova bin dir: $supernova_dir "
echo " * reads cutoff (million): $max_reads_m "
echo " * threads: $threads "
echo " * mem: $mem "
echo " * run name (output dir): $run_id "
echo
echo -e "\n assembly started: $(date) \n" >&2