INNER CODE UNIT · Python

left_pointer

hillerlab/TOGA · CESAR_wrapper.py:526

        left_pointer = 3 - right_pointer
        # apply right-side pointer
        if right_pointer != 0:
            exon_seq_rfix = (
                exon_seq_lfix[:-right_pointer] + exon_seq_lfix[-right_pointer:].lower()
            )
        else:  # save as it was
            exon_seq_rfix = exon_seq_lfix
        # save prepared exon into special dict
        cesar_input_exons[k] = exon_seq_rfix
    return cesar_input_exons


def get_chain(chain_file, chain_id):
    """Return chain string according the parameters passed."""
    chain = None  # to calm IDE down
    if chain_file.endswith(".bst"):
        # we have bdb file; extract with BDB extractor

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