INNER CODE UNIT · Python
INS_PEN
hillerlab/TOGA · CESAR_wrapper.py:72
INS_PEN = -1
DEL_PEN = -1
AA_FLANK = 15
SS_SIZE = 2
# CESAR2.0 necessary files location
FIRST_CODON_PROFILE = "extra/tables/human/firstCodon_profile.txt"
LAST_CODON_PROFILE = "extra/tables/human/lastCodon_profile.txt"
ACC_PROFILE = "extra/tables/human/acc_profile.txt"
DO_PROFILE = "extra/tables/human/do_profile.txt"
EQ_ACC_PROFILE = os.path.join(LOCATION, "supply", "eq_acc_profile.txt")
EQ_DO_PROFILE = os.path.join(LOCATION, "supply", "eq_donor_profile.txt")
def verbose(msg):
"""Write verbose in stderr if verbose == TRUE."""
eprint(msg) if VERBOSE else None