INNER CODE UNIT · Python

exon_seq

hillerlab/TOGA · CESAR_wrapper.py:442

            exon_seq = exon_seq_w_ss[SS_SIZE:-SS_SIZE]
            acc_ = exon_seq_w_ss[:SS_SIZE]
            don_ = exon_seq_w_ss[-SS_SIZE:]
        elif is_first_exon and is_last_exon:
            # no splice sites
            exon_seq = exon_seq_w_ss
            acc_, don_ = "NN", "NN"
        elif is_first_exon:
            exon_seq = exon_seq_w_ss[:-SS_SIZE]
            acc_ = "NN"
            don_ = exon_seq_w_ss[-SS_SIZE:]
        elif is_last_exon:
            exon_seq = exon_seq_w_ss[SS_SIZE:]
            acc_ = exon_seq_w_ss[:SS_SIZE]
            don_ = "NN"
        else:
            raise RuntimeError("Unreachable branch reached")
        s_sites.append(acc_)

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