INNER CODE UNIT · Python

act_start

hillerlab/TOGA · CESAR_wrapper.py:672

        act_start = act_start - extra_flank if act_start - extra_flank > 0 else 0
        act_end = (
            act_end + extra_flank if act_end + extra_flank < q_size else q_size - 1
        )

    act_search_range = f"{chrom}:{act_start}-{act_end}"
    # ext_search_range = f"{chrom}:{}-{}"
    del raw_ch_conv_s0  # not sure if this is necessary
    del raw_ch_conv_s2  # but just in case
    return (
        act_search_range,
        search_region_shift_str,
        (t_strand, t_size, q_strand, q_size),
    )


def extract_subchain(chain_str, search_locus):
    """Extract subchain containing only the search locus."""

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