INNER CODE UNIT · Python
nucl_to_add
HadrienG/InSilicoSeq · iss/error_models/__init__.py:154
nucl_to_add = util.rev_comp(full_sequence[read_start - 1 - i])
mut_seq.append(nucl_to_add)
return Seq(mut_seq)
def introduce_indels(self, record, orientation, full_seq, bounds):
"""Introduce insertions or deletions in a sequence
Introduce insertion and deletion errors according to the probabilities
present in the indel choices list
Args:
record (SeqRecord): a sequence record
orientation (string): orientation of the read. Can be 'forward' or
'reverse'
full_seq (Seq): the reference sequence from which mut_seq
comes from
bounds (tuple): the position of the read in the full_sequence