INNER CODE UNIT · Python

model_from_bam

HadrienG/InSilicoSeq · iss/app.py:147

def model_from_bam(args):
    """Main function for the `iss model` submodule

    This submodule write all variables necessary for building an ErrorModel
    to args.output + .npz

    Args:
        args (object): the command-line arguments from argparse
    """
    logger = logging.getLogger(__name__)
    logger.debug("iss version %s" % __version__)
    logger.debug("Using verbose logger")

    try:  # try to import bam module and write model data to file
        logger.info("Starting iss model")
        from iss import bam
    except ImportError as e:
        logger.error("Failed to import bam module: %s" % e)

View source record →