INNER CODE UNIT · Python

generate_reads

HadrienG/InSilicoSeq · iss/app.py:23

def generate_reads(args):
    """Main function for the `iss generate` submodule

    This submodule generates reads from an ErrorModel and write them to
        args.output + _R(1|2).fastq

    Args:
        args (object): the command-line arguments from argparse
    """
    logger = logging.getLogger(__name__)
    logger.debug("iss version %s" % __version__)
    logger.debug("Using verbose logger")
    logger.info("Starting iss generate")

    error_model = load_error_model(
        args.mode, args.seed, args.model, args.fragment_length, args.fragment_length_sd, args.store_mutations
    )

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