INNER CODE UNIT · Python

chunk_size

HadrienG/InSilicoSeq · iss/app.py:82

            chunk_size = -((n_read_pairs) // -args.cpus)  # this is ceildiv, see https://stackoverflow.com/a/17511341
            logger.debug("Chunk size: %s" % chunk_size)

            # Divide the work of generating n_reads for each record into chunks
            work_chunks = generate_work_divider(
                fasta_file,
                readcount_dic,
                abundance_dic,
                n_reads,
                args.coverage,
                args.coverage_file,
                error_model,
                args.output,
                chunk_size,
            )

            # Generate reads for each chunk in parallel
            with mp.Pool(args.cpus) as pool:

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