INNER CODE UNIT · Python

_get_columns_as_string

guma44/GEOparse · src/GEOparse/GEOTypes.py:334

    def _get_columns_as_string(self):
        """Returns columns  as SOFT formated string."""
        columnslist = []
        for rowidx, row in self.columns.iterrows():
            columnslist.append("#%s = %s" % (rowidx, row.description))
        return "\n".join(columnslist)


class GSM(SimpleGEO):
    """Class that represents sample from GEO database."""

    geotype = "SAMPLE"

    def annotate(
        self, gpl, annotation_column, gpl_on="ID", gsm_on="ID_REF", in_place=False
    ):
        """Annotate GSM with provided GPL

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