INNER CODE UNIT · Python

directory

guma44/GEOparse · src/GEOparse/GEOTypes.py:519

                    email, directory=directory, **sra_kwargs
                )
                downloaded_paths.update(downloaded_files)
            except Exception as err:
                logger.error(
                    "Cannot download %s SRA file (%s)" % (self.get_accession(), err)
                )
        return downloaded_paths

    def download_SRA(self, email, directory="./", **kwargs):
        """Download RAW data as SRA file.

        The files will be downloaded to the sample directory created ad hoc
        or the directory specified by the parameter. The sample has to come
        from sequencing eg. mRNA-seq, CLIP etc.

        An important parameter is a filetype. By default an SRA
        is accessed by FTP and such file is downloaded. This does not

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