INNER CODE UNIT · Python

passed

google/deepconsensus · deepconsensus/cli.py:93

    passed = [args.command] + passed
  if args.command == 'preprocess':
    from deepconsensus.preprocess import preprocess
    preprocess.register_required_flags()
    handle_help(passed, preprocess)
    app.run(preprocess.main, argv=passed)
  elif args.command == 'run':
    from deepconsensus.inference import quick_inference
    quick_inference.register_required_flags()
    handle_help(passed, quick_inference)
    app.run(quick_inference.main, argv=passed)
  elif args.command == 'calibrate':
    from deepconsensus.quality_calibration import calculate_baseq_calibration
    calculate_baseq_calibration.register_required_flags()
    handle_help(passed, calculate_baseq_calibration)
    app.run(calculate_baseq_calibration.main, argv=passed)
  elif args.command == 'filter_reads':
    from deepconsensus.quality_calibration import filter_reads

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