INNER CODE UNIT · Python

main

Gabaldonlab/redundans · redundans.py:1035

def main():
    import argparse

    usage = "%(prog)s -v"
    parser = argparse.ArgumentParser(
        description=desc, epilog=epilog, formatter_class=argparse.RawTextHelpFormatter
    )

    parser.add_argument("-v", "--verbose", action="store_true", help="verbose")
    parser.add_argument("--version", action="version", version="2.0.1")
    parser.add_argument(
        "-i", "--fastq", nargs="*", default=[], help="FASTQ PE / MP files"
    )
    parser.add_argument(
        "-f", "--fasta", default="", help="FASTA file with contigs / scaffolds"
    )
    parser.add_argument(
        "-o", "--outdir", default="redundans", help="output directory [%(default)s]"

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