INNER CODE UNIT · Python

get_libraries

Gabaldonlab/redundans · redundans.py:64

def get_libraries(
    fastq,
    fasta,
    mapq=10,
    threads=4,
    verbose=1,
    log=sys.stderr,
    limit=0,
    libraries=[],
    stdfracTh=0.66,
    maxcfracTh=0.9,
    genomeFrac=0.05,
    usebwa=0,
):
    """Return libraries"""
    # skip if all libs OKish
    ## max stdfrac cannot be larger than stdfracTh in any of the libraries
    if libraries and not [

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