INNER CODE UNIT · Python

symlink

Gabaldonlab/redundans · bin/FastaIndex.py:17

def symlink(file1, file2):
    """Create symbolic link taking care of real path."""
    if not os.path.isfile(file2):
        # check if need for absolute path
        file1abs = os.path.join(os.path.realpath(os.path.curdir), file1)
        if os.path.isfile(file1abs):
            os.symlink(file1abs, file2)
        # otherwise create symbolic link without full path
        else:
            os.symlink(file1, file2)

class FastaIndex(object):
    """Facilitate Fasta index (.fai) operations compatible
    with samtools faidx (http://www.htslib.org/doc/faidx.html).
    """
    def __init__(self, handle, verbose=0, log=sys.stderr):
        """ """
        ext = ".fai"

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