INNER CODE UNIT · Python
ntax
franciscozorrilla/metaGEM · workflow/metaGEM.sh:228
ntax=$(ls -d GTDBTk/*|wc -l)
echo "Taxonomy: $ntax / $nsamp samples processed ... "
#abundances: count subfolders
nabund=$(ls -d abundance/*|wc -l)
echo "Abundance: $nabund / $nsamp samples processed ... "
#models: count subfolders for sample progress and count .xml GEM files for total models generated
ngems=$(find GEMs -name "*xml"|wc -l)
ngemsamp=$(ls -d GEMs/*|wc -l)
echo "GEMs: $ngems models generated from $ngemsamp samples ... "
#model reports: count subfolders
nmemo=$(find memote -name "*.gz"|wc -l)
echo "GEM Reports: $nmemo / $ngems models samples ... "
#simulations: count .tsv files
nsmet=$(find memote -name "*.gz"|wc -l)