INNER CODE UNIT · Python

envcheck1

franciscozorrilla/metaGEM · workflow/metaGEM.sh:114

envcheck1=$(conda info --envs|grep -w metagem|wc -l)
if [[ "$envcheck1" -ge 1 ]]; then
    echo "detected! Activating metagem env ... "
    conda activate metagem
else
    echo "not detected, please run the env_setup.sh script!"
fi

echo -ne "Searching for metaWRAP conda environment ... "
envcheck2=$(conda info --envs|grep -w metawrap|wc -l)
if [[ "$envcheck2" -ge 1 ]]; then
    echo "detected!"
else
    echo "not detected, please run the env_setup.sh script!"
fi

echo -ne "Searching for prokka-roary conda environment ... "
envcheck3=$(conda info --envs|grep -w prokkaroary|wc -l)

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