INNER CODE UNIT · C++

pairs_to_read

fbreitwieser/krakenuniq · src/db_shrink.cpp:101

      pairs_to_read = block_size + 1;
      odd_block_count--;
    }

    input_file.read(buffer, pairs_to_read * pair_size);
    remaining_input_pairs -= pairs_to_read;

    output_file.write(buffer + pair_size * (pairs_to_read - Offset), pair_size);
    current_output_count++;
    if (current_output_count % 10000 == 0) {
      cerr << "\rWritten " << current_output_count << "/" << Output_count << " k-mers to new file";
    }
  }
  cerr << "\rWrote " << current_output_count << "/" << Output_count << " k-mers to new file  \n";

  input_file.close();
  output_file.close();

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