INNER CODE UNIT · C++

kmer_size_i

fbreitwieser/krakenuniq · src/classify.cpp:205

    uint8_t kmer_size_i = KrakenDatabases[i]->get_k();
    if (kmer_size_i != kmer_size) {
      fprintf(stderr, "Different k-mer sizes in databases 1 and %lu: %i vs %i!\n", i+1, (int)kmer_size, (int)kmer_size_i);
      exit(1);
    }
  };
  KmerScanner::set_k(kmer_size);

  if (Populate_memory && Populate_memory_size == 0)
    cerr << "\ncomplete." << endl;


  if (!TaxDB_file.empty()) {
      taxdb = TaxonomyDB<uint32_t>(TaxDB_file, false);
      Parent_map = taxdb.getParentMap();
  } else {
      cerr << "TaxDB argument is required!" << endl;
      return 1;

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