INNER CODE UNIT · C++

dna

fbreitwieser/krakenuniq · src/classify.cpp:515

          dna = reader->next_sequence();
          if (! reader->is_valid())
            break;
          work_unit.push_back(dna);
          total_nt += dna.seq.size();
        }
      }
      if (total_nt == 0)
        break;
      
      unordered_map<uint32_t, READCOUNTS> my_taxon_counts;
      uint64_t my_total_classified = 0;
      kraken_output_ss.str("");
      classified_output_ss.str("");
      unclassified_output_ss.str("");
      for (size_t j = 0; j < work_unit.size(); j++) {
        my_total_classified += 
            classify_sequence( work_unit[j], kraken_output_ss,

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