INNER CODE UNIT · C++

counts

fbreitwieser/krakenuniq · src/classify.cpp:278

        auto counts = KrakenDatabases[i]->count_taxons();
        for (auto it = counts.begin(); it != counts.end(); ++it) {
          ofs << it->first << '\t' << it->second << '\n';
        }
        ofs.close();
      }
      taxdb.readGenomeSizes(fname);
    }
     Report_output = cout_or_file(Report_output_file, true);
  
    TaxReport<uint32_t,READCOUNTS> rep = TaxReport<uint32_t, READCOUNTS>(*Report_output, taxdb, taxon_counts, false);
    if (HLL_PRECISION > 0) {
      if (full_report) {
        rep.setReportCols(vector<string> { 
          "%",
          "reads", 
          "taxReads",
          "kmers",

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