INNER CODE UNIT · C

data

dpryan79/MethylDackel · common.c:224

    unsigned char* data = malloc((end-start)*sizeof(unsigned char)); //allocate array for data
    int index = start/8;
    int offset = start%8;
    //int startindex = start/8; //debug
    //int startoffset = start%8; //debug

    //debug
    int arrlen = 0; //variable to store the length of the array used for the data (this is not the same as the chromosome length, as each value is one bit and this is an array of characters, i.e. bytes)
    if(chromFound)
    {
        arrlen = config->chromLengths[chrom]/8; //array length is chromosome length over 8 (number of bits to number of bytes)
        if(config->chromLengths[chrom]%8 > 0) //if there is a remainder that didn't divide evenly
        {
            arrlen++; //add an extra byte to store it
        }
    }

    for(i = 0; i<end-start; i++)

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