INNER CODE UNIT · Python

writeAggregateHDF

deeptools/HiCExplorer · hicexplorer/chicAggregateStatistic.py:134

def writeAggregateHDF(pOutFileName, pOutfileNamesList, pAcceptedScoresList, pArgs):

    aggregateFileH5Object = h5py.File(pOutFileName, 'w')

    aggregateFileH5Object.attrs['type'] = "aggregate"
    aggregateFileH5Object.attrs['version'] = __version__

    counter = 0
    for key_outer, data_outer in zip(pOutfileNamesList, pAcceptedScoresList):

        matrix_combination_key = key_outer[0][0] + '_' + key_outer[1][0]
        if matrix_combination_key not in aggregateFileH5Object:
            matrixCombinationGroup = aggregateFileH5Object.create_group(matrix_combination_key)
        else:
            matrixCombinationGroup = aggregateFileH5Object[matrix_combination_key]

        for key, data in zip(key_outer, data_outer):
            if len(data) == 0:

View source record →