INNER CODE UNIT · Python

run_target_list_compilation

deeptools/HiCExplorer · hicexplorer/chicAggregateStatistic.py:201

def run_target_list_compilation(pInteractionFilesList, pTargetList, pTargetFType, pTargetPosDict, pArgs, pViewpointObj, pQueue=None, pOneTarget=False):
    outfile_names_list = []
    accepted_scores_list = []
    target_regions_intervaltree = None
    try:
        if pTargetFType == 'bed3':
            try:
                target_regions = utilities.readBed(pTargetList)
            except Exception as exp:
                pQueue.put('Fail: ' + str(exp) + traceback.format_exc())
                return
            hicmatrix = hm.hiCMatrix()
            target_regions_intervaltree = hicmatrix.intervalListToIntervalTree(target_regions)[0]

        for i, interactionFile in enumerate(pInteractionFilesList):
            outfile_names_list_intern = []
            accepted_scores_list_intern = []
            for sample in interactionFile:

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