INNER CODE UNIT · Python

main

deeptools/HiCExplorer · hicexplorer/chicAggregateStatistic.py:318

def main(args=None):
    args = parse_arguments().parse_args(args)
    viewpointObj = Viewpoint()

    interactionList = []
    interactionDict = {}

    targetList = []
    present_genes = {}
    target_ftype = ''
    targetPosDict = None
    # read hdf file
    interactionFileHDF5Object = h5py.File(args.interactionFile, 'r')
    keys_interactionFile = list(interactionFileHDF5Object.keys())

    if h5py.is_hdf5(args.targetFile):
        targetDict, present_genes = viewpointObj.readTargetHDFFile(args.targetFile)
        target_ftype = 'hdf5'

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