INNER CODE UNIT · Python

groupObject

deeptools/HiCExplorer · hicexplorer/chicAggregateStatistic.py:187

            groupObject = chromosomeObject.create_group(key[-1])
            groupObject["chromosome"] = chromosome
            groupObject.create_dataset("start_list", data=start_list, compression="gzip", compression_opts=9)
            groupObject.create_dataset("end_list", data=end_list, compression="gzip", compression_opts=9)
            groupObject["gene_name"] = gene_name
            groupObject["sum_of_interactions"] = sum_of_interactions
            groupObject.create_dataset("relative_distance_list", data=relative_distance_list, compression="gzip", compression_opts=9)
            groupObject.create_dataset("raw_target_list", data=raw_target_list, compression="gzip", compression_opts=9)

            geneGroup[key[-1]] = chromosomeObject[key[-1]]

    aggregateFileH5Object.close()


def run_target_list_compilation(pInteractionFilesList, pTargetList, pTargetFType, pTargetPosDict, pArgs, pViewpointObj, pQueue=None, pOneTarget=False):
    outfile_names_list = []
    accepted_scores_list = []
    target_regions_intervaltree = None

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