INNER CODE UNIT · C++

abs_pos

DecodeGenetics/graphtyper · src/graph/absolute_position.cpp:48

    abs_pos = chromosome_to_offset.at(chromosome) + contig_position;
  }
  catch (std::out_of_range const &)
  {
    std::cerr << "[gyper::absolute_position] ERROR: No chromosome \"" << chromosome
              << "\" available. Available chromosomes are:\n";

    for (auto it = chromosome_to_offset.begin(); it != chromosome_to_offset.end(); ++it)
      std::cerr << it->first << "\n";

    std::cerr << std::endl;
    assert(false);
    std::exit(113);
  }

  return abs_pos;
}

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