INNER CODE UNIT · Python

parse_args

cbg-ethz/V-pipe · workflow/scripts/alignmentIntervals.py:11

def parse_args():
    """Set up the parsing of command-line arguments"""

    parser = argparse.ArgumentParser(
        description="Benchmark: compute the union/intersection among coverage "
        "intervals to compare performance between aligner or SNV "
        "caller",
        formatter_class=argparse.ArgumentDefaultsHelpFormatter,
    )
    requiredNamed = parser.add_argument_group("required named arguments")
    requiredNamed.add_argument(
        "-d",
        required=True,
        default=None,
        metavar="DIR1,DIR2,...",
        dest="directories",
        help="Sub-directories where results from vpipeBench are stored",
    )

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