INNER CODE UNIT · Python

parse_args

cbg-ethz/V-pipe · workflow/scripts/alignmentBias.py:13

def parse_args():
    """Set up the parsing of command-line arguments"""

    parser = argparse.ArgumentParser(
        formatter_class=argparse.ArgumentDefaultsHelpFormatter
    )

    requiredNamed = parser.add_argument_group("required named arguments")
    requiredNamed.add_argument(
        "-r",
        required=True,
        default=None,
        metavar="FASTA",
        dest="reference_file",
        type=str,
        help="Referene sequence",
    )
    requiredNamed.add_argument(

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