INNER CODE UNIT · Python

connectivity

burkesquires/python_biologist · 06_data_vis_python/bokeh/server/app/clustering/main.py:37

    connectivity = 0.5 * (connectivity + connectivity.T)

    # Generate the new colors:
    if algorithm=='MiniBatchKMeans':
        model = cluster.MiniBatchKMeans(n_clusters=n_clusters, n_init=3)

    elif algorithm=='Birch':
        model = cluster.Birch(n_clusters=n_clusters)

    elif algorithm=='DBSCAN':
        model = cluster.DBSCAN(eps=.2)

    elif algorithm=='AffinityPropagation':
        model = cluster.AffinityPropagation(damping=.9,
                                            preference=-200)

    elif algorithm=='MeanShift':
        model = cluster.MeanShift(bandwidth=bandwidth,

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