INNER CODE UNIT · Python

prefix

brentp/peddy · peddy/cli.py:43

                               prefix=prefix, **kwargs)
        if check == "het_check":
            df, background_df = df
    else:
        df = getattr(p, check)(vcf, plot=plot)

    if df is None:
        return check, None, None

    df.to_csv(prefix + (".%s.csv" % check), sep=",", index=False, float_format="%.4g")
    if 'keep' in df.columns:
        df = df.loc[df['keep'].astype("bool"), :]
        df.drop(['keep'], axis=1, inplace=True)
    d, unit = time.time() - t0, "seconds"
    if d > 100:
        d /= 60
        unit = "minutes"
    log.info("ran in %.1f %s" % (d, unit))

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