INNER CODE UNIT · Python

prepare_databases

BortonWrightonLabs/DRAM · bin/format_kegg_database.py:18

def prepare_databases(
    kegg_loc,
    gene_ko_link_loc,
    output_dir="kegg",
    kegg_download_date=None,
    threads=10,
):
    # setup temp, logging, and db_handler
    output_dir = Path(output_dir)
    if not output_dir.exists():
        output_dir.mkdir(parents=True)
    temporary = output_dir / "database_files"
    temporary.mkdir()

    LOGGER.info("Database preparation started")
    LOGGER.info("Processing KEGG database")

    processed_locs = process_kegg(

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