INNER CODE UNIT · Python

CORE_COLUMNS

BortonWrightonLabs/DRAM · bin/distill.py:40

CORE_COLUMNS = RRNA_COLUMNS + [COL_MODULE]
FRAME_COLUMNS = CORE_COLUMNS + OPTIONAL_COLUMNS
RRNA_TYPES = ["5S rRNA", "16S rRNA", "23S rRNA"]
TAXONOMY_LEVELS = ["d", "p", "c", "o", "f", "g", "s"]
CONSTANT_DISTILLATE_COLUMNS = [
    COL_GENE_ID,
    COL_GENE_DESCRIPTION,
    COL_MODULE,
    COL_HEADER,
    COL_SUBHEADER,
]
DISTILATE_SORT_ORDER_COLUMNS = [COL_HEADER, COL_SUBHEADER, COL_MODULE, COL_GENE_ID]
EXCEL_MAX_CELL_SIZE = 32767

FASTA_COLUMN = os.getenv("FASTA_COLUMN", "input_fasta")
DISTILL_DIR = Path(__file__).parent / "assets/forms/distill_sheets"
DEFAULT_GROUPBY_COLUMN = COL_SHEET

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