INNER CODE UNIT · Rust
frac_cover_cutoff
bluenote-1577/skani · src/chain.rs:105
frac_cover_cutoff = D_FRAC_COVER_CUTOFF.parse::<f64>().unwrap()/100.;
}
}
let both_frac_cover_cutoff = command_params.both_min_aligned_frac;
let length_cover_cutoff = 5000000;
let bp_chain_band = if amino_acid {BP_CHAIN_BAND_AAI} else {BP_CHAIN_BAND};
let index_chain_band = bp_chain_band/ref_sketch.c;
let min_score = min_anchors as f64 * anchor_score * 0.75;
// let min_score = 0.;
let k = ref_sketch.k;
let model;
if let Some(m) = model_opt{
model = Some(m);
}
else{
model = None
}